Registrar of the university Isfakul Islam told the Dhaka Tribune that 36 people include university unit president and vice-president.
The BCL men were asked to reply to the notice after Eid vacation.
On Thursday, authorities of the university asked students to vacate all residential halls following the clashes.
Following the direction, almost all the students have already left their respective dormitories.
A clash took place between the supporters of Sanjibon Chakraborty and Imran Khan president and general secretary of university unit BCL over a football tournament.
Since the day, several clashes took place on the campus and scores of BCL activists were injured in the fighting.
The university will remain closed from Sunday until September 15 on the occasion of Eid-ul-Azha.
